Genome in a Bottle
Authoritative Characterization of
Benchmark Human Genomes
The Genome in a Bottle Consortium is a public-private-academic consortium hosted by NIST to develop the technical infrastructure (reference standards, reference methods, and reference data) to enable translation of whole human genome sequencing to clinical practice. The priority of GIAB is authoritative characterization of human genomes for use in analytical validation and technology development, optimization, and demonstration. In 2015, NIST released the pilot genome Reference Material 8398, which is genomic DNA (NA12878) derived from a large batch of the Coriell cell line GM12878, characterized for high-confidence SNPs, indel, and homozygous reference regions (Zook, et al., Nature Biotechnology 2014).
Current work includes using a large collection of diverse data from two Personal Genome Project trios to characterize more difficult regions of the genome and more difficult types of variants like structural variants. These two trios as planned for release as NIST Reference Materials 8391, 8392, and 8393 in September 2016. Data and analyses are publicly available (GIAB GitHub). A description of data generated by GIAB is published here. To standardize best practices for using GIAB genomes for benchmarking, we are working with the Global Alliance for Genomics and Health Benchmarking Team (benchmarking tools).
The consortium was initiated in a set of meetings in 2011 and 2012, and the consortium holds open, public workshops in January at Stanford University in Palo Alto, CA and in August/September at NIST in Gaithersburg, MD. Slides from workshops and conferences are available online. The consortium is open and welcomes new participants.
The next GIAB workshop is scheduled for September 15-16, 2016 in Gaithersburg, MD. Registration is open here, and an agenda will be posted here soon.